PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0023.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 331aa    MW: 38291.1 Da    PI: 9.8767
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17361181199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l+++ l++pkkfa +   k   + t++l+ ++g  W+vk+    + + ++l++GW +F  ++ L+e Df+vF+++g+s+f   v++f++
  Kaladp0028s0023.1.p  36 LSRSELRVPKKFAMKLPVK--LGETIKLRGPTGDIWSVKV--VETEEDVLLREGWPRFLYDHLLNEYDFLVFHYTGSSSF--DVSIFDR 118
                          67788********777544..7789***************..99999*****************************9999..9999998 PP

2B354.42.3e-17138227199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+  +  ++s+ l +pkk   ++ +k   +  ++l+ +sg++W+v    +  +g  +l++GW eFv+++ L+e  f+vF+++g+s+f
  Kaladp0028s0023.1.p 138 FFKVM--NKEFRSK-LLIPKKLSVRFVEK--MGNIIRLKGPSGNVWKVGA--KTAGGDAILGRGWAEFVSDHSLDESNFLVFHHTGDSSF 220
                          78888..7777776.99999987777433..4558***************..999999****************************9999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v +f+ 
  Kaladp0028s0023.1.p 221 --SVLIFDP 227
                          ..9999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2123121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-2025121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3826119IPR003340B3 DNA binding domain
SMARTSM010193.1E-1131119IPR003340B3 DNA binding domain
PfamPF023623.9E-1436118IPR003340B3 DNA binding domain
CDDcd100172.95E-1536117No hitNo description
Gene3DG3DSA:2.40.330.106.9E-22135230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-23135233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.352135228IPR003340B3 DNA binding domain
CDDcd100177.65E-16136226No hitNo description
PfamPF023621.2E-14138226IPR003340B3 DNA binding domain
SMARTSM010191.1E-11138228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAEMDEREEI SRAMEEQIYW NQFESTKHHF FETVELSRSE LRVPKKFAMK LPVKLGETIK  60
LRGPTGDIWS VKVVETEEDV LLREGWPRFL YDHLLNEYDF LVFHYTGSSS FDVSIFDRNG  120
CMKDLRMLQD QFEIKPHFFK VMNKEFRSKL LIPKKLSVRF VEKMGNIIRL KGPSGNVWKV  180
GAKTAGGDAI LGRGWAEFVS DHSLDESNFL VFHHTGDSSF SVLIFDPSRC EKESSHFVKP  240
AARSADLRGE RARKMGKLPA GFTGGGDHER EETPISKMQC KVNPKMKGKM RIQEKNDTPA  300
HKTMKLPKEL TLEQLQDLKI KHNQRKQQRR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein